Day 3 - Protein Structure Prediction
and Language Models

Material

• Slides

• Notebook - AlphaFold (using MSA input)

• Notebook - ESMFold (using LM input)

Databases

• RCSB -  Database of experimentally (x-ray,  nmr, cryoEM) solved structures

• AlphaFold Protein Structure Database - Predicted Uniprot sequences (from isolate genomes)

• ESM Metagenomic Atlas - Predicted representative Mgnify sequences (from metagenomes)

Webservers

• Foldseek - Structure search